PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS708835.10
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C3H
Protein Properties Length: 116aa    MW: 12280.8 Da    PI: 8.2231
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS708835.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.33.5e-105681227
                  -S---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                  kt+lC+ f     Ck+Gd+C+FaHg+
  EcS708835.10 56 KTRLCNKFNTAEGCKFGDKCHFAHGE 81
                  8***********************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501038.427117IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-155186IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-95285IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.6295482IPR000571Zinc finger, CCCH-type
SMARTSM003568.2E-45481IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-75681IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 116 aa     Download sequence    Send to blast
TSGCPFGEGC HFLHYVPGGF KAVSQMLNLG GNPTLPHASR NAAPSYPEAP SPTAVKTRLC  60
NKFNTAEGCK FGDKCHFAHG EWELGKPTGP SYDDPRGMVP PSGRYGGRNE PPPPGL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010043856.11e-81PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R03e-34C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A059D5U61e-81A0A059D5U6_EUCGR; Uncharacterized protein
TrEMBLA0A059D6M45e-82A0A059D6M4_EUCGR; Uncharacterized protein
STRINGGLYMA10G44330.15e-56(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23362875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.12e-15C3H family protein